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Brunnert, Marcus
Krahnke, Tillmann
Urfer, Wolfgang
Year of Publication: 
Series/Report no.: 
Technical Report 2001,49
The secondary structure classification of amino acid sequences can be carried out by a statistical analysis of sequence and structure data using state-space models. Aiming at this classification, a modified filter algorithm programmed in S is applied to data of three proteins. The application leads to correct classifications of two proteins even when using relatively simple estimation methods for the parameters of the state-space models. Furthermore, it has been shown that the assumed initial distribution strongly influences the classification results referring to two proteins.
Secondary structure classification
discrete state-space models
Document Type: 
Working Paper
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